GMD (version 0.3.3)

chipseq: ChIP-seq data: ChIP-seq Enrichment around TSSs

Description

The Distributions of Histone Modification Enrichment (and Others) by ChIP-seq reads that are binned, aligned and averaged around +/-5000nt of Transcription Start Sites (TSSs) of scattered-type TSSDs (see References).

Usage

chipseq_mES
chipseq_hCD4T

Details

chipseq_mES is a list of 6 named ChIP-seq read distributions from mouse ES cells. chipseq_hCD4T is a list of 40 named ChIP-seq read distributions from human CD4+ T cells.

References

Zhao et al (2011), "Systematic Clustering of Transcription Start Site Landscapes", PLoS ONE 6(8): e23409.

http://dx.plos.org/10.1371/journal.pone.0023409

See Also

gmdp and gmdm, with examples using chipseq. cage for data of Transcription Start Sites (TSSs) by CAGE tags.

Examples

require(GMD)
help(chipseq)
data(chipseq_mES)
class(chipseq_mES)
length(chipseq_mES)
names(chipseq_mES)
## Not run: chipseq_mES

data(chipseq_hCD4T)
names(chipseq_hCD4T)