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Mediana

Mediana is an R package which provides a general framework for clinical trial simulations based on the Clinical Scenario Evaluation approach. The package supports a broad class of data models (including clinical trials with continuous, binary, survival-type and count-type endpoints as well as multivariate outcomes that are based on combinations of different endpoints), analysis strategies and commonly used evaluation criteria.

Find out more at http://gpaux.github.io/Mediana/ and check out the case studies.

Installation

Get the released version from CRAN:

install.packages("Mediana")

Or the development version from github:

# install.packages("devtools")
devtools::install_github("gpaux/Mediana", build_opts = NULL)

Vignettes

Mediana includes 3 vignettes. In particular, an introduction of the package and several case studies:

vignette(topic = "mediana", package = "Mediana")
vignette(topic = "case-studies", package = "Mediana")

Online Manual

A detailed online manual is accessible at http://gpaux.github.io/Mediana/

References

Clinical trial optimization using R book

Clinical Trial Optimization Using R explores a unified and broadly applicable framework for optimizing decision making and strategy selection in clinical development, through a series of examples and case studies.It provides the clinical researcher with a powerful evaluation paradigm, as well as supportive R tools, to evaluate and select among simultaneous competing designs or analysis options. It is applicable broadly to statisticians and other quantitative clinical trialists, who have an interest in optimizing clinical trials, clinical trial programs, or associated analytics and decision making.

This book presents in depth the Clinical Scenario Evaluation (CSE) framework, and discusses optimization strategies, including the quantitative assessment of tradeoffs. A variety of common development challenges are evaluated as case studies, and used to show how this framework both simplifies and optimizes strategy selection. Specific settings include optimizing adaptive designs, multiplicity and subgroup analysis strategies, and overall development decision-making criteria around Go/No-Go. After this book, the reader will be equipped to extend the CSE framework to their particular development challenges as well.

Mediana R package has been widely used to implement the case studies presented in this book. The detailed description and R code of these case studies are available on this website.

Publications

The Mediana package has been successfully used in multiple clinical trials to perform power calculations as well as optimally select trial designs and analysis strategies (clinical trial optimization). For more information on applications of the Mediana package, download the following papers:

Citation

If you find Mediana useful, please cite it in your publications:

citation("Mediana")
#> 
#> To cite package 'Mediana' in publications use:
#> 
#>   Gautier Paux and Alex Dmitrienko. (2019). Mediana: Clinical Trial Simulations. R
#>   package version 1.0.8. http://gpaux.github.io/Mediana/
#> 
#> A BibTeX entry for LaTeX users is
#> 
#>   @Manual{,
#>     title = {Mediana: Clinical Trial Simulations},
#>     author = {Gautier Paux and Alex Dmitrienko.},
#>     year = {2019},
#>     note = {R package version 1.0.8},
#>     url = {http://gpaux.github.io/Mediana/},
#>   }
#> 
#> ATTENTION: This citation information has been auto-generated from the package DESCRIPTION
#> file and may need manual editing, see 'help("citation")'.

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Version

Install

install.packages('Mediana')

Monthly Downloads

331

Version

1.0.8

License

GPL-2

Maintainer

Gautier Paux

Last Published

May 8th, 2019

Functions in Mediana (1.0.8)

GenerateData

Generate data
GenerateReport

Clinical Scenario Evaluation Report
Event

Event object
EvaluationModel

EvaluationModel object
SampleSize

SampleSize object
Section

Section object
MultAdjProc

MultAdjProc object
SimParameters

SimParameters object
MultAdjStrategy

MultAdjStrategy object
Statistic

Statistic object
Project

Project object
ExtractAnalysisStack

ExtractAnalysisStack function
ExtractDataStack

ExtractDataStack function
Test

Test object
families

Create list of character strings
MultAdj

MultAdj object
AdjustPvalues

AdjustPvalues function
OutcomeDist

OutcomeDist object
Mediana-package

Clinical Trial Simulations
Subsection

Subsection object
Table

Table object
Sample

Sample object
PresentationModel

PresentationModel object
AnalysisModel

AnalysisModel object
CustomLabel

CustomLabel object
DataStack

DataStack object
Design

Design object
CSE

Clinical Scenario Evaluation
Criterion

Criterion object
AdjustCIs

AdjustCIs function
AnalysisStack

AnalysisStack object
DataModel

DataModel object