Learn R Programming

⚠️There's a newer version (1.1-12) of this package.Take me there.

VGAM (version 0.9-0)

Vector Generalized Linear and Additive Models

Description

Vector generalized linear and additive models, and associated models (Reduced-Rank VGLMs, Quadratic RR-VGLMs, Reduced-Rank VGAMs). This package fits many models and distribution by maximum likelihood estimation (MLE) or penalized MLE. Also fits constrained ordination models in ecology.

Copy Link

Version

Install

install.packages('VGAM')

Monthly Downloads

42,087

Version

0.9-0

License

GPL-2

Maintainer

Last Published

September 1st, 2012

Functions in VGAM (0.9-0)

Bivariate Logistic Distribution Family Function

The ABO Blood Group System

Returns Important Matrices etc. of a RR-VGLM Object

Data on Back Pain Prognosis, from Anderson (1984)

The AB-Ab-aB-ab2 Blood Group System

The AB-Ab-aB-ab Blood Group System

Extract Model Coefficients for VLM Objects

betabinomial.ab

Beta-binomial Distribution Family Function

Exponential Regression by Asymmetric Maximum Likelihood Estimation

The MNSs Blood Group System

Poisson Regression by Asymmetric Maximum Likelihood Estimation

Bivariate Binary Regression with an Odds Ratio

Link functions for VGLM/VGAM/etc. families

Ordinal Regression with Continuation Ratios

Asymmetric Laplace Distribution Family Functions

Ordinal Regression with Adjacent Categories Probabilities

Bivariate Gamma: McKay's Distribution

Fitting Constrained Additive Ordination (CAO)

Borel-Tanner Distribution Family Function

Univariate Normal Distribution with Double Censoring

Mark the Baseline of Row and Column on a Matrix data

Ali-Mikhail-Haq Distribution's Bivariate Distribution

Bivariate normal distribution

Felix Distribution Family Function

The Inverse Gaussian Distribution

Quasi-variances Preprocessing Function

The Pareto Distribution

The Two-parameter Beta Distribution Family Function

Chi-squared Distribution

Beta-binomial Distribution Family Function

The Laplace Distribution

The G1G2G3 Blood Group System

The Folded-Normal Distribution

Bradley Terry Model With Ties

Benini Distribution Family Function

Chinese Population in New Zealand 1867--2001 Data

The Generalized Extreme Value Distribution

Gumbel's Type I Bivariate Distribution Family Function

Farlie-Gumbel-Morgenstern's Bivariate Distribution

calibrate.qrrvglm

Calibration for CQO, UQO and CAO models

The AA-Aa-aa Blood Group System

Estimated Crime in 2009 in USA

Coef.rrvglm-class

Class ``Coef.rrvglm''

Create a Survival Object

Vector Generalized Linear and Additive Models

Model Calibrations

Crashes on New Zealand Roads in 2009

The Generalized Gamma Distribution

Bivariate Probit Model (Family Function)

Latent Variable Plot

Binomial Family Function

DeLury's Method for Population Size Estimation

Asymmetric Least Squares Quantile Regression

Coef.qrrvglm-class

Class ``Coef.qrrvglm''

Beta Distribution of the Second Kind

Cauchit Link Function

Expectiles-Exponential

Expectiles of the Exponential Distribution

Response variable extracted

Extract Model Constrained/Canonical Coefficients

Akaike's Information Criterion

Freund's (1961) Bivariate Extension of the Exponential Distribution

Benford's Distribution

The Beta-Prime Distribution

Bivariate Logistic Distribution

Returns Important Matrices etc. of a QO Object

Geometric Distribution

Mixture of Two Poisson Distributions

Chest Pain in NZ Adults Data

Biplot of Constrained Regression Models

Identity Link Function

The Beta-Binomial Distribution

The Beta-Geometric Distribution

Generalized Beta Distribution of the Second Kind

Gaussian (normal) Family Function

Binomial Logistic Regression by Asymmetric Maximum Likelihood Estimation

Breathlessness and Wheeze Amongst Coalminers Data

Frank's Bivariate Distribution

Toxicity trial for insects

Control Function for RR-VGAMs (CAO)

Fitting Constrained Quadratic Ordination (CQO)

Ordinal Regression with Cumulative Probabilities

Double Exponential Binomial Distribution Family Function

Computes Model Coefficients and Quantities

Auckland University Undergraduate Counts Data

The Two-parameter Beta Distribution Family Function

Leipnik Distribution Family Function

Redirects the user to cqo

Constrained (Canonical) Coefficients

CommonVGAMffArguments

Common VGAM family function Arguments

The Generalized Pareto Distribution

plotvgam.control

Control Function for plotvgam()

Cardioid Distribution Family Function

Gamma-Ordinal Link Function

Exponential Distribution

New Zealand Marital Data.

General Electric and Westinghouse Data

Fitting a Dirichlet Distribution

Creates a Matrix of Appropriate Dimension

Negative binomial canonical link function

Censored Normal Distribution

GARMA (Generalized Autoregressive Moving-Average) Models

Beta-geometric Distribution Family Function

Inverse Lomax Distribution Family Function

Haight's Zeta Family Function

calibrate-methods

Calibration for Constrained Regression Models

Fitting a Dirichlet-Multinomial Distribution

Multinomial Logit Model

Venice Maximum Sea Levels Data

Control function for vglm

Generalized Gamma distribution family function

Expectiles-Uniform

Expectiles of the Uniform Distribution

Perks Distribution Family Function

Latent Variable Plot for RR-VGLMs

Lomax Distribution Family Function

The Dagum Distribution

Harvard University International Enrollments

Residual Degrees-of-Freedom

Fisher's Z Link Function

Lerch Phi Function

The Frechet Distribution

The Beta-Normal Distribution

Poisson-points-on-a-plane/volume Distances Distribution

Logit Link Function

Birnbaum-Saunders Distribution Family Function

Row-Column Interaction Models including Goodman's RC Association Model

2-parameter Gamma Distribution

Gamma Hyperbola Bivariate Distribution

Censored Poisson Family Function

Censored Gumbel Distribution

The Gompertz Distribution

F Distribution Family Function

Fitting a Dirichlet-Multinomial Distribution

Exponential Poisson Distribution Family Function

Gumbel Distribution Family Function

Expectiles-Normal

Expectiles of the Normal Distribution

Lognormal Distribution

Redirects the user to rrvglm

The Lambert W function

negbinomial.size

Negative Binomial Distribution Family Function With Known Size

Proportional Odds Model for Ordinal Regression

Plackett's Bivariate Distribution Family Function

The Fisk Distribution

Exponential Geometric Distribution Family Function

Hunting Spider Data

Harvard University Degrees Conferred by Student Ethnicity

Inputting Data to fit a Bradley Terry Model

Density Plot for LMS Quantile Regression

Grain Prices Data in USA

Generalized Extreme Value Distribution Family Function

Complementary Log-log Link Function

Model Diagnostic Plots for QRR-VGLMs

LMS Quantile Regression with a Box-Cox Transformation to Normality

Body Mass Index of New Zealand Adults Data

Minimizing the L-q norm Family Function

The Exponential Geometric Distribution

Constrained Quadratic Ordination

Maxwell Distribution Family Function

Erlang Distribution

Hyperbolic Secant Distribution Family Function

The Exponential Poisson Distribution

Nakagami Distribution

Exponentiated Exponential Distribution

Smart Prediction Setup

Index from Array to Matrix

Exponentiated Exponential Distribution

The Rice Distribution

Positive Normal Distribution Family Function

Constraint Matrices

Folded Normal Distribution Family Function

invparalogistic

Inverse Paralogistic Distribution Family Function

The Generalized Beta Distribution (Libby and Novick, 1982)

Retrieve One Component of ``.smart.prediction''

Kumaraswamy Distribution Family Function

calibrate.qrrvglm.control

Control function for CQO/UQO/CAO calibration

2-parameter Gamma Distribution

Inverse Gaussian Distribution Family Function

Exponential Link Function

Cauchy Distribution Family Function

Control function for rrvglm

Generalized Poisson distribution

Michaelis-Menten Model

Acute Myelogenous Leukemia Survival Data

Zero-Altered Poisson Distribution

Cumulative Distribution Function for LMS Quantile Regression

Positive-geometric Distribution

get.smart.prediction

Retrieves ``.smart.prediction''

Cardioid Distribution

The Borel-Tanner Distribution

1-parameter Gamma Distribution

Positive Negative Binomial Distribution Family Function

Paralogistic Distribution Family Function

The Generalized Rayleigh Distribution

Laplace Distribution

Huggins (1991) Capture-recapture Model Family Function (approximation only)

Fitted Values of a VLM object

Rutherford-Geiger Polonium Data

Likelihood Ratio Test of Nested Models

2008 Summer Olympic Final Medal Count Data

Logarithmic Distribution

Folded Square Root Link Function

Quantile Plot for LMS Quantile Regression

Reciprocal Inverse Gaussian distribution

Prentice (1974) Log-gamma Distribution

qrrvglm.control

Control function for QRR-VGLMs (CQO)

The Gumbel Distribution

Expectiles-Koenker

Expectiles/Quantiles of the Koenker Distribution

Univariate Skew-Normal Distribution Family Function

Gumbel-II Distribution Family Function

plotqtplot.lmscreg

Quantile Plot for LMS Quantile Regression

Log link function

Determine What Mode the Smart Prediction is In

Mixture of Two Univariate Normal Distributions

Rayleigh Distribution Family Function

Defining smooths in VGAM formulae

Hat Values and Regression Deletion Diagnostics

The Pareto(IV/III/II) Distributions

2008 World Fly Fishing Championships (Number of captures) Data

Levy Distribution Family Function

Adds a List to the End of the List ``.smart.prediction''

The Skellam Distribution

Vector cubic smoothing spline

Positive Binomial Distribution Family Function

Generalized Rayleigh Distribution Family Function

Zero Constraint Matrices

LMS Quantile Regression with a Box-Cox transformation to a Gamma Distribution

Construct the Model Frame of a VLM Object

The Truncated Pareto Distribution

Huber's least favourable distribution

Complementary-log Link Function

Low-iron Rat Teratology Data

Hypergeometric Family Function

Parallelism Constraint Matrices

Negative Binomial Distribution Family Function

Quantile Plot for Gumbel Regression

The Exponential Logarithmic Distribution

Logistic Distribution Family Function

Makeham Distribution Family Function

The Laplace Distribution

Generalized Pareto Distribution Family Function

Koenker's Distribution Family Function

Huggins (1991) Capture-recapture Model

Test For a Smart Object

Trajectory Plot

Exponential Logarithmic Distribution Family Function

Harvard University Numbers of Ladder Faculty by School and Ethnicity

Slash Distribution

Inverse Binomial Distribution Family Function

Nested reduced-rank autoregressive models for multiple time series

Skew-Normal Distribution

McCullagh (1989) Distribution Family Function

Zero-Altered Negative Binomial Distribution

The Triangle Distribution

Loglinear Model for Three Binary Responses

notdocumentedyet

Undocumented and Internally Used Functions and Classes

Log-log Link Function

Latent Variable Plot for QO models

Positive-Negative Binomial Distribution

rrvglm.optim.control

Control function for rrvglm() calling optim()

The Log-Gamma Distribution

Mean Excess Plot

Simplex Distribution

Latent Variables

1-parameter Gamma Distribution

The Positive-Normal Distribution

Undergraduate Statistics Students Lifestyle Questionnaire

The Poisson Lognormal Distribution

Marginal effects for the multinomial logit and cumulative models

Mixture of Two Exponential Distributions

Pareto and Truncated Pareto Distribution Family Functions

Multinomial Logit Link Function

Logarithmic Distribution

smart.expression

S Expression for Smart Functions

The Gumbel-II Distribution

Fitting Vector Generalized Linear Models

Huber's least favourable distribution family function

University California Berkeley Graduate Admissions

Predict Method for a CQO fit

Log-gamma Distribution Family Function

Upper Record Values from a Univariate Normal Distribution

Riemann's Zeta Function

LMS Quantile Regression with a Yeo-Johnson Transformation to Normality

Trajectory plot for QRR-VGLMs

Univariate Normal Distribution

Log link function with an offset

Zero-Altered Negative Binomial Distribution

Perspective plot for QRR-VGLMs

Wald Distribution Family Function

Class ``rrvglm''

Fitting Reduced-Rank Vector Generalized Linear Models (RR-VGLMs)

quasibinomialff

Quasi-Binomial Family Function

plotdeplot.lmscreg

Density Plot for LMS Quantile Regression

Cleans Up After Smart Prediction

The Matched Binomial Distribution Family Function

Zero-Altered Binomial Distribution

Default VGAM Plotting

Power Link Function

Morgenstern's Bivariate Distribution Family Function

Quasi-Poisson Family Function

model.matrixvlm

Construct the Design Matrix of a VLM Object

Poisson-Ordinal Link Function

Positive Poisson Distribution Family Function

Zipf Distribution Family Function

Rice Distribution Family Function

Fitting Unconstrained Quadratic Ordination (UQO)

Waitakere Ranges Data

Hunua Ranges Data

Positive-Poisson Distribution

Upper Record Values from a 1-parameter Exponential Distribution

Control function for vgam

Zeta Distribution Family Function

Rhobit Link Function

Negative Binomial-Ordinal Link Function

Ordinal Poisson Family Function

Main effects plot for a Row-Column Interaction Model (RCIM)

Probit Link Function

Prior and Working Weights of a VGLM fit

Zero-Altered Geometric Distribution

Yeo-Johnson Transformation

A Short-tailed Symmetric Distribution

Reciprocal link function

Yule-Simon Distribution

The Dirichlet distribution

Class ``vglmff''

von Mises Distribution Family Function

Poisson Family Function

Zero-Inflated Binomial Distribution Family Function

2008 World Fly Fishing Championships (Individual results) Data

Zero-Altered Binomial Distribution

Probability Plots for Categorical Data Analysis

2008 World Fly Fishing Championships (Team results) Data

Log-Laplace and Logit-Laplace Distribution Family Functions

2008 World Fly Fishing Championships Data

Singh-Maddala Distribution Family Function

The Two-stage Sequential Binomial Distribution Family Function

Loglinear Model for Two Binary Responses

Toxoplasmosis Data

Ordinal Regression with Stopping Ratios

The Log-Laplace Distribution

Oxford Temperature Data

Return Level Plot for GEV Fits

Zero-Inflated Poisson Distribution (Yip (1988) algorithm)

undocumented-methods

Undocumented Methods Functions

Point System for the 2008 World Fly Fishing Championships

Smart Prediction

Fitting Vector Generalized Additive Models

Yule-Simon Family Function

Positive-Binomial Distribution

Weibull Distribution Family Function

The zero Argument in VGAM Family Functions

Control Function for UQO models

Zero-Altered Poisson Distribution

Zero-Inflated Negative Binomial Distribution

Zero-Inflated Poisson Distribution

Cross-sectional Data from the New Zealand Population

Zero-Altered Geometric Distribution

Pneumoconiosis in Coalminers Data

Zero-Inflated Negative Binomial Distribution Family Function

Student t Distribution

Predict Method for a VGLM fit

Zero-Inflated Geometric Distribution

Exchangeable bivariate cloglog odds-ratio model from a zero-inflated Poisson distribution

Zero-Inflated Binomial Distribution

Zero-Inflated Geometric Distribution Family Function

Zero-Inflated Poisson Distribution Family Function