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lgcp

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Version

Install

install.packages('lgcp')

Monthly Downloads

1,012

Version

1.8

License

GPL-2 | GPL-3

Maintainer

Benjamin Taylor

Last Published

May 17th, 2022

Functions in lgcp (1.8)

Extract.stppp function

CovParameters function

EvaluatePrior function

Extract.mstppp function

CovarianceFct function

CovFunction.function

CovFunction.function function

GAfinalise.MonteCarloAverage

GAfinalise.MonteCarloAverage function

BetaParameters function

GAreturnvalue function

GAfinalise function

GFinitialise.nullFunction

GFinitialise.nullFunction function

GAreturnvalue.nullAverage

GAreturnvalue.nullAverage function##'

GAupdate.nullAverage

GAupdate.nullAverage function

MALAlgcpSpatial

MALAlgcpSpatial function

SpatialPolygonsDataFrame.stapp

SpatialPolygonsDataFrame.stapp function

GAfinalise.nullAverage

GAfinalise.nullAverage function

GammafromY function

MALAlgcpSpatioTemporal.PlusPars

MALAlgcpSpatioTemporal.PlusPars function

GaussianPrior function

SpikedExponentialCovFct

SpikedExponentialCovFct function

aggCovInfo.ArealWeightedMean

aggCovInfo.ArealWeightedMean function

aggCovInfo.ArealWeightedSum

aggCovInfo.ArealWeightedSum function

GFreturnvalue function

GAreturnvalue.MonteCarloAverage

GAreturnvalue.MonteCarloAverage function

GAinitialise.MonteCarloAverage

GAinitialise.MonteCarloAverage function

GPdrv2 function

GAinitialise.nullAverage

GAinitialise.nullAverage function

GFinitialise.dump2dir

GFinitialise.dump2dir function

GFinitialise function

CovFunction function

GAupdate.MonteCarloAverage

GAupdate.MonteCarloAverage function

GAupdate function

GPdrv2_Multitype

GPdrv2_Multitype function

as.im.fromXYZ function

GFupdate.nullFunction

GFupdate.nullFunction function

as.stppp.stapp function

as.SpatialPixelsDataFrame

as.SpatialPixelsDataFrame function

GFreturnvalue.nullFunction

GFreturnvalue.nullFunction function

GFreturnvalue.dump2dir

GFreturnvalue.dump2dir function

as.stppp function

as.SpatialGridDataFrame.fromXYZ

as.SpatialGridDataFrame.fromXYZ function

GFfinalise function

GAinitialise function

GPlist2array function

MALAlgcp function

bt.scalar function

blockcircbaseFunction

blockcircbaseFunction function

GFfinalise.nullFunction

GFfinalise.nullFunction function

MonteCarloAverage

MonteCarloAverage function

GFupdate function

GFfinalise.dump2dir

GFfinalise.dump2dir function

GFupdate.dump2dir

GFupdate.dump2dir function

PriorSpec function

GPrealisation function

affine.fromFunction

affine.fromFunction function

MALAlgcpMultitypeSpatial.PlusPars

MALAlgcpMultitypeSpatial.PlusPars function

MALAlgcpAggregateSpatial.PlusPars

MALAlgcpAggregateSpatial.PlusPars function

addTemporalCovariates

addTemporalCovariates function

YfromGamma function

affine.fromXYZ function

MALAlgcpSpatial.PlusPars

MALAlgcpSpatial.PlusPars function

constantInTime.numeric

constantInTime.numeric function

as.owinlist.SpatialPolygonsDataFrame

as.owinlist.SpatialPolygonsDataFrame function

density.stppp function

as.owinlist.stapp

as.owinlist.stapp function

constantInTime.stppp

constantInTime.stppp function

add.list function

as.list.lgcpgrid

as.list.lgcpgrid function

affine.SpatialPolygonsDataFrame

affine.SpatialPolygonsDataFrame function

discreteWindow function

expectation.lgcpPredict

expectation.lgcpPredict function

eigenfrombase function

circulant.numeric

circulant.numeric function

clearinterp function

fftmultiply function

dump2dir function

fftinterpolate.fromXYZ

interpolate.fromXYZ function

getZmat function

getZmats function

KinhomAverage function

ginhomAverage function

as.fromXYZ function

constanth function

betavals function

as.fromXYZ.fromFunction

as.fromXYZ.fromFunction function

affine.stppp function

cov.interp.fft function

blockcircbase function

aggCovInfo.Majority

aggCovInfo.Majority function

fftinterpolate.fromFunction

fftinterpolate.fromFunction function

fftinterpolate.fromSPDF

fftinterpolate.fromSPDF function

expectation.lgcpPredictSpatialOnlyPlusParameters

expectation.lgcpPredictSpatialOnlyPlusParameters function

.onAttach function

discreteWindow.lgcpPredict

discreteWindow.lgcpPredict function

LogGaussianPrior

LogGaussianPrior function

extendspatialAtRisk

extendspatialAtRisk function

aggCovInfo function

exponentialCovFct

exponentialCovFct function

affine.fromSPDF

affine.fromSPDF function

as.ppp.stppp function

checkObsWin function

as.ppp.mstppp function

aggregateCovariateInfo

aggregateCovariateInfo function

getCounts function

chooseCellwidth

chooseCellwidth function

getRotation.stppp

getRotation.stppp function

getRotation.default

getRotation.default function

PriorSpec.list function

aggregateformulaList

aggregateformulaList function

getCovParameters.GPrealisation

getCovParameters.GPrealisation function

as.SpatialPixelsDataFrame.lgcpgrid

as.SpatialPixelsDataFrame.lgcpgrid function

as.array.lgcpgrid

as.array.lgcpgrid function

as.owin.stapp function

grid2spdf function

guessinterp function

RandomFieldsCovFct

RandomFieldsCovFct function

autocorr function

autocorrMultitype

autocorrMultitype function

as.owinlist function

computeGradtruncSpatioTemporal

computeGradtruncSpatioTemporal function

extract function

computeGradtruncSpatial

computeGradtruncSpatial function

getpolyol function

grid2spts function

gridInWindow function

condProbs function

intens function

integerise.stppp

integerise.stppp function

generic hasNext method

andrieuthomsh function

extract.lgcpPredict

extract.lgcpPredict function

getRotation function

getLHSformulaList

getLHSformulaList function

gridav function

gridav.lgcpPredict

gridav.lgcpPredict function

constantInTime function

iteration number

do we retain this iteration?

hasNext.iter function

exceedProbs function

etavals function

fftinterpolate function

fftgrid function

formulaList function

integerise function

gOverlay function

as.im.fromFunction

as.im.fromFunction function

circulant function

assigninterp function

as.SpatialGridDataFrame

as.SpatialGridDataFrame function

as.im.fromSPDF function

circulant.matrix

circulant.matrix function

initialiseAMCMC.andrieuthomsh

initaliseAMCMC.andrieuthomsh function

hvals.lgcpPredict

hvals.lgcpPredict function

d.func function

covEffects function

exceedProbsAggregated

exceedProbsAggregated function

lgcpPredict function

lgcpPredictSpatialPlusPars

lgcpPredictSpatialPlusPars function

lgcpPredictSpatioTemporalPlusPars

lgcpPredictSpatioTemporalPlusPars function

lgcpPredictAggregateSpatialPlusPars

lgcpPredictAggregateSpatialPlusPars function

initialiseAMCMC.constanth

initaliseAMCMC.constanth function

intens.lgcpSimSpatialPlusParameters

intens.lgcpSimSpatialPlusParameters function

getinterp function

inversebase function

interptypes function

lgcpgrid function

lgcpPredictAggregated

lgcpPredictAggregated function

lgcpPredictMultitypeSpatialPlusPars

lgcpPredictMultitypeSpatialPlusPars function

lgcpgrid.array function

expectation function

genFFTgrid function

maternCovFct15 function

getlgcpPredictSpatialINLA

getlgcpPredictSpatialINLA function

grid2spix function

lgcpgrid.matrix

lgcpgrid.matrix function

mcmcProgressNone

null progress monitor

neattable function

lgcpgrid.list function

iterator for MCMC loops

multiply.list function

integerise.mstppp

integerise.mstppp function

getCellCounts function

getCovParameters

getCovParameters function

getCovParameters.list

getCovParameters.list function

lambdaEst function

lambdaEst.ppp function

is.SPD function

maternCovFct25 function

paramprec function

plot.lgcpgrid function

osppp2merc function

plot.lgcpZmat function

plotExceed function

plotExceed.array

plotExceed.array function

gridfun function

gridfun.lgcpPredict

gridfun.lgcpPredict function

image.lgcpgrid function

initialiseAMCMC

initialiseAMCMC function

mcmctrace.lgcpPredict

mcmctrace.lgcpPredict function

mstppp.list function

mcmctrace function

print.lgcpPredict

print.lgcpPredict function

identify.lgcpPredict

identify.lgcpPredict function

grid2spoly function

print.lgcpgrid function

lgcpForecast function

mstppp.ppp function

identifygrid function

intens.lgcpSimMultitypeSpatialPlusParameters

intens.lgcpSimMultitypeSpatialPlusParameters function

intens.lgcpPredict

intens.lgcpPredict function

rgauss function

lgcpInits function

roteffgain function

is this a burn-in iteration?

is.pow2 function

lgcpPrior function

paramprecbase function

plot.lgcpPredict

plot.lgcpPredict function

parautocorr function

lgcpSim function

lambdaEst.stppp

lambdaEst.stppp function

lgcpSimMultitypeSpatialCovariates

lgcpSimMultitypeSpatialCovariates function

meanfield function

lgcppars function

meanfield.lgcpPredict

meanfield.lgcpPredict function

plot.lgcpQuantiles

plot.lgcpQuantiles function

lgcpSimSpatial function

neigh2D function

lgcpvignette function

print.dump2dir function

postcov.lgcpPredictSpatioTemporalPlusParameters

postcov.lgcpPredictSpatioTemporalPlusParameters function

mstppp.stppp function

print.fromFunction

print.fromFunction function

next step of an MCMC chain

numCases function

plot.mcmcdiag function

plot.mstppp function

showGrid function

print.fromSPDF function

rescale.stppp function

rotmat function

spatialAtRisk.fromXYZ

spatialAtRisk.fromXYZ function

spatialAtRisk.default

spatialAtRisk.default function

showGrid.default

showGrid.default function

lgcpPredictSpatial

lgcpPredictSpatial function

osppp2latlon function

serr.lgcpPredict

serr.lgcpPredict function

stppp.list function

spatialAtRisk.function

spatialAtRisk.function function

spatialAtRisk.im

spatialAtRisk.im function

stGPrealisation

stGPrealisation function

stppp.ppp function

spatialparsEst function

target.and.grad.SpatioTemporalPlusPars

target.and.grad.SpatioTemporalPlusPars function

target.and.grad.spatial

target.and.grad.spatial function

lgcpPredictSpatialINLA

lgcpPredictSpatialINLA function

matchcovariance

matchcovariance function

graphical progress monitor

plot.fromXYZ function

lgcpSimSpatialCovariates

lgcpSimSpatialCovariates function

mcmcpars function

plotExceed.lgcpPredict

plotExceed.lgcpPredict function

temporalAtRisk.function

temporalAtRisk.function function

loc2poly function

lgcpbayes function

loop over an iterator

mcmcProgressTextBar

text bar progress monitor

parsummary function

mcmcProgressPrint

printing progress monitor

window.lgcpPredict

window.lgcpPredict function

plot.fromSPDF function

Population of Welsh counties

plot.stppp function

plot.temporalAtRisk

plot.temporalAtRisk function

temporalAtRisk.numeric

temporalAtRisk.numeric function

updateAMCMC function

plot.lgcpAutocorr

plot.lgcpAutocorr function

updateAMCMC.andrieuthomsh

updateAMCMC.andrieuthomsh function

postcov.lgcpPredictSpatialOnlyPlusParameters

postcov.lgcpPredictSpatialOnlyPlusParameters function

meanfield.lgcpPredictINLA

meanfield.lgcpPredictINLA function

nullAverage function

mstppp function

nullFunction function

postcov.lgcpPredictMultitypeSpatialPlusParameters

postcov.lgcpPredictMultitypeSpatialPlusParameters function

xvals.lgcpPredict

xvals.lgcpPredict function

plotit function

print.gridaverage

print.gridaverage function

print.fromXYZ function

print.temporalAtRisk

print.temporalAtRisk function

seintens function

spatialAtRisk function

segProbs function

print.stppp function

print.stapp function

postcov function

spatialAtRisk.SpatialGridDataFrame

spatialAtRisk.SpatialGridDataFrame function

print.mcmc function

print.mstppp function

quantile.lgcpPredict

quantile.lgcpPredict function

quantile.lgcpgrid

quantile.lgcpgrid function

stapp.list function

selectObsWindow.default

selectObsWindow.default function

selectObsWindow.stppp

selectObsWindow.stppp function

showGrid.lgcpPredict

showGrid.lgcpPredict function

postcov.lgcpPredictAggregateSpatialPlusParameters

postcov.lgcpPredictAggregateSpatialPlusParameters function

raster.lgcpgrid

raster.lgcpgrid function

rescale.mstppp function

samplePosterior

samplePosterior function

summary.lgcpgrid

summary.lgcpgrid function

rr.lgcpPredict function

summary.mcmc function

priorpost function

traceplots function

transblack function

spatialIntensities

spatialIntensities function

showGrid.stppp function

spatialAtRisk.lgcpgrid

spatialAtRisk.lgcpgrid function

selectObsWindow

selectObsWindow function

seintens.lgcpPredict

seintens.lgcpPredict function

setTxtProgressBar2

set the progress bar

setoutput function

stapp.SpatialPolygonsDataFrame

stapp.SpatialPolygonsDataFrame function

spatialIntensities.fromSPDF

spatialIntensities.fromSPDF function

varfield.lgcpPredict

varfield.lgcpPredict function

smultiply.list function

spatialIntensities.fromXYZ

spatialIntensities.fromXYZ function

target.and.grad.spatialPlusPars

target.and.grad.spatialPlusPars function

spatialAtRisk.bivden

spatialAtRisk.bivden function

spatialAtRisk.SpatialPolygonsDataFrame

spatialAtRisk.SpatialPolygonsDataFrame function

sparsebase function

target.and.grad.spatiotemporal

target.and.grad.spatiotemporal function

touchingowin function

transred function

toral.cov.mat function

tempRaster function

txtProgressBar2

A text progress bar with label

yvals.default function

yvals.SpatialGridDataFrame

yvals.SpatialGridDataFrame function

temporalAtRisk function

zvals.SpatialGridDataFrame

zvals.SpatialGridDataFrame function

transgreen function

transblue function

updateAMCMC.constanth

updateAMCMC.constanth function

xvals.default function

varfield function

varfield.lgcpPredictINLA

varfield.lgcpPredictINLA function

xvals.fromXYZ function

xvals.SpatialGridDataFrame

xvals.SpatialGridDataFrame function

yvals.fromXYZ function

yvals.lgcpPredict

yvals.lgcpPredict function

zvals.default function

zvals.fromXYZ function

target.and.grad.AggregateSpatialPlusPars

target.and.grad.AggregateSpatialPlusPars function

target.and.grad.MultitypespatialPlusPars

target.and.grad.MultitypespatialPlusPars function

thetaEst function

textsummary function

Welsh town details: population

Welsh town details: location