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spatsurv

Spatial Survival Analysis R Package

The GitHub Version of this package is the developmental version.

The latest checked and tested version is available on CRAN, click HERE.

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Version

Install

install.packages('spatsurv')

Monthly Downloads

872

Version

2.0

License

GPL-3

Maintainer

Benjamin Taylor

Last Published

October 2nd, 2023

Functions in spatsurv (2.0)

EvalCov function

Summarise function

QuadApprox function

Independent function

basehazard.basehazardspec

basehazard.basehazardspec function

TwoWayHazAdditive

TwoWayHazAdditive function

PsplineHaz function

NonSpatialLogLikelihood_or_gradient

NonSpatialLogLikelihood_or_gradient function

allocate function

baselinehazard function

SpikedExponentialCovFct

SpikedExponentialCovFct function

baselinehazard_multiWay

baselinehazard_multiWay function

YfromGamma function

YFromGamma_SPDE

YFromGamma_SPDE function

SPDEprec function

circulant.numeric

circulant.numeric function

circulant.matrix

circulant.matrix function

distinfo function

baseHazST function

circulantij function

basehazard function

covmodel function

cumulativeBspline.construct

cumulativeBspline.construct function

density_PP function

London Fire Brigade property

fixmatrix function

frailtylag1 function

getleneta function

distinfo.basehazardspec

distinfo.basehazardspec function

betapriorGauss function

boxplotRisk function

London Fire Brigade response times to dwelling fires, 2009

getGrid function

getBbasis function

hazard_PP function

hazardexceedance

hazardexceedance function

densityquantile

densityquantile function

getparranges function

iteration number

do we retain this iteration?

maxlikparamPHsurv

maxlikparamPHsurv function

gamma2risk function

grid2spts function

estimateY function

gencens function

.onAttach function

gradbasehazard function

gridY_polygonal

gridY_polygonal function

iterator for MCMC loops

densityquantile.basehazardspec

densityquantile.basehazardspec function

gradbasehazard.basehazardspec

gradbasehazard.basehazardspec function

guess_t function

cumbasehazard function

derivindepGaussianpriorST

derivindepGaussianpriorST function

cumbasehazard.basehazardspec

cumbasehazard.basehazardspec function

derivpsplineprior

derivpsplineprior function

etapriorGauss function

multiWayHaz function

generic hasNext method

hasNext.iter function

indepGaussianprior

indepGaussianprior function

getOptCellwidth

getOptCellwidth function

gompertzHaz function

getsurvdata function

neighLocs function

exponentialHaz function

proposalVariance

proposalVariance function

posteriorcov function

polymult function

grid2spdf function

hessbasehazard.basehazardspec

hessbasehazard.basehazardspec function

hesscumbasehazard.basehazardspec

hesscumbasehazard.basehazardspec function

grid2spix function

hesscumbasehazard

hesscumbasehazard function

indepGaussianpriorST

indepGaussianpriorST function

mcmcPriors function

imputationModel

imputationModel function

mcmcProgressNone

null progress monitor

loop over an iterator

makehamHaz function

omegapriorGaussST

omegapriorGaussST function

print.mcmcspatsurv

print.mcmcspatsurv function

omegapriorGauss

omegapriorGauss function

checkSurvivalData

checkSurvivalData function

circulant function

neighOrder function

next step of an MCMC chain

densityquantile_PP

densityquantile_PP function

derivindepGaussianprior

derivindepGaussianprior function

print.mlspatsurv

print.mlspatsurv function

quantile.mcmcspatsurv

quantile.mcmcspatsurv function

fixParHaz function

getcov function

fixedpars function

getgrd function

polyadd function

plotsurv function

setupHazard function

hazardpars function

proposalVariance_SPDE

proposalVariance_SPDE function

mcmcProgressPrint

printing progress monitor

setTxtProgressBar2

set the progress bar

rootWeibullHaz function

setupPrecMatStruct

setupPrecMatStruct function

survival_PP function

transformweibull

transformweibull function

txtProgressBar2

A text progress bar with label

survspat function

spatialpars function

randompars function

quantile.mlspatsurv

quantile.mlspatsurv function

reconstruct.bs function

mcmcProgressTextBar

text bar progress monitor

predict.mcmcspatsurv

predict.mcmcspatsurv function

print.mcmc function

gradcumbasehazard

gradcumbasehazard function

print.textSummary

print.textSummary function

reconstruct.bs.coxph

reconstruct.bs.coxph function

priorposterior function

reconstruct.bs.mcmcspatsurv

reconstruct.bs.mcmcspatsurv function

summary.mcmcspatsurv

summary.mcmcspatsurv function

simsurv function

hessbasehazard function

showGrid function

gradcumbasehazard.basehazardspec

gradcumbasehazard.basehazardspec function

Spatial Survival Plot in 3D

timevaryingPL function

tpowHaz function

spatsurv-package

vcov.mcmcspatsurv

vcov.mcmcspatsurv function

inference.control

inference.control function

survspatNS function

textSummary function

insert function

logPosterior_gridded

logPosterior_gridded function

vcov.mlspatsurv

vcov.mlspatsurv function

is this a burn-in iteration?

invtransformweibull

invtransformweibull function

logPosterior function

logPosterior_SPDE

logPosterior_SPDE function

optifix function

plot.FFTgrid function

psplineRWprior function

logPosterior_polygonal

logPosterior_polygonal function

mcmcpars function

psplineprior function

residuals.mcmcspatsurv

resuiduals.mcmcspatsurv function

midpts function

spatsurvVignette

spatsurvVignette function

weibullHaz function

summary.mcmc function

proposalVariance_polygonal

proposalVariance_polygonal function

proposalVariance_gridded

proposalVariance_gridded function

BsplineHaz function

FFTgrid function

ExponentialCovFct

ExponentialCovFct function

GammaFromY_SPDE

GammaFromY_SPDE function

CSplot function

Bspline.construct

Bspline.construct function

GammafromY function